STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY41290.116S ribosomal RNA methyltransferase KsgA/Dim1 family protein. (209 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
    
 0.915
OSY39260.1
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein.
  
  
 
0.914
OSY42881.1
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein.
  
  
 
0.908
OSY44000.1
CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.876
betA_1
Oxygen-dependent choline dehydrogenase.
     
  0.800
betA_2
Oxygen-dependent choline dehydrogenase.
     
  0.800
betA_3
Oxygen-dependent choline dehydrogenase.
     
  0.800
hcaE
3-phenylpropionate/cinnamic acid dioxygenase subunit alpha.
     
  0.800
codA
Choline oxidase.
     
  0.800
dinF
DNA-damage-inducible protein F.
       0.773
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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