Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY35530.1 | OSY41304.1 | BG845_05970 | BG845_02206 | Universal stress protein. | Hypothetical protein. | 0.557 |
OSY35530.1 | yhdG_3 | BG845_05970 | BG845_01585 | Universal stress protein. | Putative amino acid permease YhdG. | 0.455 |
OSY38484.1 | OSY41304.1 | BG845_04000 | BG845_02206 | Universal stress protein. | Hypothetical protein. | 0.494 |
OSY38484.1 | yhdG_3 | BG845_04000 | BG845_01585 | Universal stress protein. | Putative amino acid permease YhdG. | 0.421 |
OSY40323.1 | OSY41304.1 | BG845_02726 | BG845_02206 | PemK-like protein. | Hypothetical protein. | 0.416 |
OSY41304.1 | OSY35530.1 | BG845_02206 | BG845_05970 | Hypothetical protein. | Universal stress protein. | 0.557 |
OSY41304.1 | OSY38484.1 | BG845_02206 | BG845_04000 | Hypothetical protein. | Universal stress protein. | 0.494 |
OSY41304.1 | OSY40323.1 | BG845_02206 | BG845_02726 | Hypothetical protein. | PemK-like protein. | 0.416 |
OSY41304.1 | OSY41796.1 | BG845_02206 | BG845_01825 | Hypothetical protein. | Hypothetical protein. | 0.418 |
OSY41304.1 | dapB | BG845_02206 | BG845_02207 | Hypothetical protein. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.590 |
OSY41304.1 | pnp | BG845_02206 | BG845_02204 | Hypothetical protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.523 |
OSY41304.1 | ptrA | BG845_02206 | BG845_02205 | Hypothetical protein. | Protease 3 precursor; Belongs to the peptidase M16 family. | 0.523 |
OSY41304.1 | yhdG_3 | BG845_02206 | BG845_01585 | Hypothetical protein. | Putative amino acid permease YhdG. | 0.434 |
OSY41796.1 | OSY41304.1 | BG845_01825 | BG845_02206 | Hypothetical protein. | Hypothetical protein. | 0.418 |
dapB | OSY41304.1 | BG845_02207 | BG845_02206 | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | Hypothetical protein. | 0.590 |
dapB | pnp | BG845_02207 | BG845_02204 | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.649 |
dapB | ptrA | BG845_02207 | BG845_02205 | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | Protease 3 precursor; Belongs to the peptidase M16 family. | 0.663 |
pnp | OSY41304.1 | BG845_02204 | BG845_02206 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Hypothetical protein. | 0.523 |
pnp | dapB | BG845_02204 | BG845_02207 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.649 |
pnp | ptrA | BG845_02204 | BG845_02205 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Protease 3 precursor; Belongs to the peptidase M16 family. | 0.863 |
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