STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degS_2Signal transduction histidine-protein kinase/phosphatase DegS. (407 aa)    
Predicted Functional Partners:
nreC_2
Oxygen regulatory protein NreC.
 
 0.962
degU_8
Transcriptional regulatory protein DegU.
 
 0.839
degU_12
Transcriptional regulatory protein DegU.
 
 0.839
nreC_3
Oxygen regulatory protein NreC.
 
 0.839
devR_2
Transcriptional regulatory protein DevR (DosR).
 
 0.838
liaR_17
Transcriptional regulatory protein LiaR.
 
 
 0.813
caeA_1
Carboxylesterase A precursor.
       0.774
desK_7
Sensor histidine kinase DesK.
 
     0.773
nreC_1
Oxygen regulatory protein NreC.
 
 
 0.770
liaS_4
Sensor histidine kinase LiaS.
  
     0.766
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
Server load: low (14%) [HD]