Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
caeA_1 | degS_2 | BG845_02213 | BG845_02214 | Carboxylesterase A precursor. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.774 |
caeA_1 | nreC_2 | BG845_02213 | BG845_02215 | Carboxylesterase A precursor. | Oxygen regulatory protein NreC. | 0.774 |
degS_2 | caeA_1 | BG845_02214 | BG845_02213 | Signal transduction histidine-protein kinase/phosphatase DegS. | Carboxylesterase A precursor. | 0.774 |
degS_2 | degU_12 | BG845_02214 | BG845_04724 | Signal transduction histidine-protein kinase/phosphatase DegS. | Transcriptional regulatory protein DegU. | 0.839 |
degS_2 | degU_8 | BG845_02214 | BG845_02739 | Signal transduction histidine-protein kinase/phosphatase DegS. | Transcriptional regulatory protein DegU. | 0.839 |
degS_2 | desK_7 | BG845_02214 | BG845_06021 | Signal transduction histidine-protein kinase/phosphatase DegS. | Sensor histidine kinase DesK. | 0.773 |
degS_2 | devR_2 | BG845_02214 | BG845_02259 | Signal transduction histidine-protein kinase/phosphatase DegS. | Transcriptional regulatory protein DevR (DosR). | 0.838 |
degS_2 | liaR_17 | BG845_02214 | BG845_06867 | Signal transduction histidine-protein kinase/phosphatase DegS. | Transcriptional regulatory protein LiaR. | 0.813 |
degS_2 | liaS_4 | BG845_02214 | BG845_00887 | Signal transduction histidine-protein kinase/phosphatase DegS. | Sensor histidine kinase LiaS. | 0.766 |
degS_2 | nreC_1 | BG845_02214 | BG845_00489 | Signal transduction histidine-protein kinase/phosphatase DegS. | Oxygen regulatory protein NreC. | 0.770 |
degS_2 | nreC_2 | BG845_02214 | BG845_02215 | Signal transduction histidine-protein kinase/phosphatase DegS. | Oxygen regulatory protein NreC. | 0.962 |
degS_2 | nreC_3 | BG845_02214 | BG845_06028 | Signal transduction histidine-protein kinase/phosphatase DegS. | Oxygen regulatory protein NreC. | 0.839 |
degU_12 | degS_2 | BG845_04724 | BG845_02214 | Transcriptional regulatory protein DegU. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.839 |
degU_12 | desK_7 | BG845_04724 | BG845_06021 | Transcriptional regulatory protein DegU. | Sensor histidine kinase DesK. | 0.731 |
degU_12 | liaS_4 | BG845_04724 | BG845_00887 | Transcriptional regulatory protein DegU. | Sensor histidine kinase LiaS. | 0.705 |
degU_12 | nreC_1 | BG845_04724 | BG845_00489 | Transcriptional regulatory protein DegU. | Oxygen regulatory protein NreC. | 0.728 |
degU_8 | degS_2 | BG845_02739 | BG845_02214 | Transcriptional regulatory protein DegU. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.839 |
degU_8 | desK_7 | BG845_02739 | BG845_06021 | Transcriptional regulatory protein DegU. | Sensor histidine kinase DesK. | 0.719 |
degU_8 | liaR_17 | BG845_02739 | BG845_06867 | Transcriptional regulatory protein DegU. | Transcriptional regulatory protein LiaR. | 0.759 |
degU_8 | liaS_4 | BG845_02739 | BG845_00887 | Transcriptional regulatory protein DegU. | Sensor histidine kinase LiaS. | 0.700 |
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