Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY40704.1 | OSY40708.1 | BG845_02462 | BG845_02466 | Hypothetical protein. | Putative HTH-type transcriptional regulator/MT0914. | 0.489 |
OSY40704.1 | mhqD | BG845_02462 | BG845_02464 | Hypothetical protein. | Putative hydrolase MhqD. | 0.501 |
OSY40704.1 | mhqO | BG845_02462 | BG845_02465 | Hypothetical protein. | Putative ring-cleaving dioxygenase MhqO. | 0.468 |
OSY40704.1 | yabJ_2 | BG845_02462 | BG845_02463 | Hypothetical protein. | Enamine/imine deaminase. | 0.557 |
OSY40708.1 | OSY40704.1 | BG845_02466 | BG845_02462 | Putative HTH-type transcriptional regulator/MT0914. | Hypothetical protein. | 0.489 |
OSY40708.1 | mhqD | BG845_02466 | BG845_02464 | Putative HTH-type transcriptional regulator/MT0914. | Putative hydrolase MhqD. | 0.445 |
OSY40708.1 | mhqO | BG845_02466 | BG845_02465 | Putative HTH-type transcriptional regulator/MT0914. | Putative ring-cleaving dioxygenase MhqO. | 0.445 |
OSY41793.1 | mhqO | BG845_01822 | BG845_02465 | Phospholipase/Carboxylesterase. | Putative ring-cleaving dioxygenase MhqO. | 0.976 |
OSY42149.1 | mhqO | BG845_01647 | BG845_02465 | Hypothetical protein. | Putative ring-cleaving dioxygenase MhqO. | 0.429 |
fdxA_2 | mhqO | BG845_06541 | BG845_02465 | Ferredoxin 7Fe; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Putative ring-cleaving dioxygenase MhqO. | 0.443 |
fdxA_2 | nqo4 | BG845_06541 | BG845_00370 | Ferredoxin 7Fe; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | NADH-quinone oxidoreductase subunit 4; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.981 |
mhqD | OSY40704.1 | BG845_02464 | BG845_02462 | Putative hydrolase MhqD. | Hypothetical protein. | 0.501 |
mhqD | OSY40708.1 | BG845_02464 | BG845_02466 | Putative hydrolase MhqD. | Putative HTH-type transcriptional regulator/MT0914. | 0.445 |
mhqD | mhqO | BG845_02464 | BG845_02465 | Putative hydrolase MhqD. | Putative ring-cleaving dioxygenase MhqO. | 0.995 |
mhqD | yabJ_2 | BG845_02464 | BG845_02463 | Putative hydrolase MhqD. | Enamine/imine deaminase. | 0.638 |
mhqO | OSY40704.1 | BG845_02465 | BG845_02462 | Putative ring-cleaving dioxygenase MhqO. | Hypothetical protein. | 0.468 |
mhqO | OSY40708.1 | BG845_02465 | BG845_02466 | Putative ring-cleaving dioxygenase MhqO. | Putative HTH-type transcriptional regulator/MT0914. | 0.445 |
mhqO | OSY41793.1 | BG845_02465 | BG845_01822 | Putative ring-cleaving dioxygenase MhqO. | Phospholipase/Carboxylesterase. | 0.976 |
mhqO | OSY42149.1 | BG845_02465 | BG845_01647 | Putative ring-cleaving dioxygenase MhqO. | Hypothetical protein. | 0.429 |
mhqO | fdxA_2 | BG845_02465 | BG845_06541 | Putative ring-cleaving dioxygenase MhqO. | Ferredoxin 7Fe; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.443 |
page 1 of 2