STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoD_2Putative HMP/thiamine import ATP-binding protein YkoD. (634 aa)    
Predicted Functional Partners:
ykoC
Putative HMP/thiamine permease protein YkoC.
 
 0.986
OSY40832.1
ABC-type cobalt transport system, permease component.
 
  
 0.900
ecfT
Energy-coupling factor transporter transmembrane protein EcfT.
 
 
 0.832
nikB_3
Nickel transport system permease protein NikB.
  
  
 0.628
cbiQ
Cobalt transport protein CbiQ.
  
 
 0.561
bioN
Energy-coupling factor transporter transmembrane protein BioN.
  
 
 0.561
gsiA_10
Glutathione import ATP-binding protein GsiA; Overlaps another CDS with the same product name.
 
  
0.497
oppD_3
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  
0.478
mbtB
Phenyloxazoline synthase MbtB.
     
 0.463
oppF_5
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
  
0.454
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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