STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCCGlycine betaine/carnitine/choline-binding protein OpuCC precursor. (302 aa)    
Predicted Functional Partners:
opuCB
Carnitine transport permease protein OpuCB.
 
 0.999
opuBB_1
Choline transport system permease protein OpuBB.
 
 0.998
opuCA_2
Carnitine transport ATP-binding protein OpuCA.
 0.997
opuCD
Carnitine transport permease protein OpuCD.
 
 0.997
opuBB_2
Choline transport system permease protein OpuBB.
 
 0.997
opuCA_3
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 0.988
OSY42458.1
Hypothetical protein.
  
    0.830
OSY40572.1
MOSC domain protein.
       0.773
gmr
Cyclic di-GMP phosphodiesterase Gmr.
  
    0.550
osmF_3
Putative osmoprotectant uptake system substrate-binding protein OsmF precursor.
  
  
 
0.547
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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