STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DesC_3Fatty acid desaturase. (321 aa)    
Predicted Functional Partners:
desA3_1
Stearoyl-CoA 9-desaturase.
  
 0.923
OSY40148.1
Stearoyl-CoA 9-desaturase electron transfer partner.
     
 0.905
DesC_2
Fatty acid desaturase.
  
  
 
0.901
DesC_1
Fatty acid desaturase.
  
  
 
0.900
lcfB_16
Long-chain-fatty-acid--CoA ligase.
  
 
 0.662
OSY40579.1
Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase.
       0.532
OSY42814.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 
 0.504
OSY39143.1
Helix-turn-helix protein.
  
     0.475
OSY39475.1
Hypothetical protein.
   
  
 0.442
OSY37562.1
Trm112p-like protein; Belongs to the UPF0434 family.
  
     0.410
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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