STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pytH_2Pyrethroid hydrolase. (239 aa)    
Predicted Functional Partners:
OSY39900.1
Haloalkane dehalogenase.
  
     0.768
OSY40582.1
Hypothetical protein.
       0.616
xlnD_2
3-hydroxybenzoate 6-hydroxylase 1.
 
  
 0.545
hcaR_6
Hca operon transcriptional activator.
       0.457
OSY38719.1
Uridine kinase.
  
  
 0.422
OSY44184.1
Bacterial regulatory proteins, tetR family.
 
     0.420
OSY43116.1
DinB superfamily protein.
  
 0.405
OSY40964.1
Hypothetical protein.
  
 0.405
OSY40965.1
Hypothetical protein.
  
 0.405
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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