STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bclA_1Benzoate--CoA ligase. (544 aa)    
Predicted Functional Partners:
namA
NADPH dehydrogenase.
 
 0.995
vioD_2
Putative tryptophan hydroxylase VioD.
 
 0.980
vioD_4
Putative tryptophan hydroxylase VioD.
 
 0.980
vioD_1
Putative tryptophan hydroxylase VioD.
 
 0.979
vioD_3
Putative tryptophan hydroxylase VioD.
 
 0.978
OSY40621.1
Cupin domain protein.
 
     0.907
yabJ_3
Enamine/imine deaminase.
 
  
 0.868
tesB_1
Acyl-CoA thioesterase 2.
 
  
 0.854
paaX_1
Transcriptional repressor PaaX.
 
     0.719
OSY40620.1
Hypothetical protein.
       0.675
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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