STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gutB_3Sorbitol dehydrogenase. (343 aa)    
Predicted Functional Partners:
adhT_1
Alcohol dehydrogenase.
 
0.941
adh_3
NADP-dependent isopropanol dehydrogenase.
  
  
 
0.917
dmpP
Phenol hydroxylase P5 protein.
  
 
 0.910
mmoY
Methane monooxygenase component A beta chain.
    
  0.901
mmoX
Methane monooxygenase component A alpha chain.
     
  0.900
OSY38129.1
MmoB/DmpM family protein.
     
  0.900
mdh_2
Malate dehydrogenase.
  
 
 0.822
OSY40046.1
BMC domain protein.
     
 0.789
pucR_4
Purine catabolism regulatory protein.
 
   
 0.783
adhT_2
Alcohol dehydrogenase.
 
 
0.463
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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