Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY34941.1 | OSY40150.1 | BG845_06396 | BG845_02973 | NAD dependent epimerase/dehydratase family protein. | SnoaL-like domain protein. | 0.434 |
OSY35910.1 | OSY40150.1 | BG845_05748 | BG845_02973 | Hypothetical protein. | SnoaL-like domain protein. | 0.433 |
OSY38697.1 | OSY40150.1 | BG845_03899 | BG845_02973 | Methyltransferase domain protein. | SnoaL-like domain protein. | 0.444 |
OSY40150.1 | OSY34941.1 | BG845_02973 | BG845_06396 | SnoaL-like domain protein. | NAD dependent epimerase/dehydratase family protein. | 0.434 |
OSY40150.1 | OSY35910.1 | BG845_02973 | BG845_05748 | SnoaL-like domain protein. | Hypothetical protein. | 0.433 |
OSY40150.1 | OSY38697.1 | BG845_02973 | BG845_03899 | SnoaL-like domain protein. | Methyltransferase domain protein. | 0.444 |
OSY40150.1 | OSY40151.1 | BG845_02973 | BG845_02974 | SnoaL-like domain protein. | Anaerobic benzoate catabolism transcriptional regulator. | 0.907 |
OSY40150.1 | OSY42034.1 | BG845_02973 | BG845_01530 | SnoaL-like domain protein. | Carboxylesterase BioH. | 0.496 |
OSY40150.1 | fdxA_2 | BG845_02973 | BG845_06541 | SnoaL-like domain protein. | Ferredoxin 7Fe; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.443 |
OSY40150.1 | frdB_2 | BG845_02973 | BG845_02248 | SnoaL-like domain protein. | Fumarate reductase iron-sulfur subunit. | 0.467 |
OSY40150.1 | nqo4 | BG845_02973 | BG845_00370 | SnoaL-like domain protein. | NADH-quinone oxidoreductase subunit 4; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.439 |
OSY40150.1 | nqo9 | BG845_02973 | BG845_05712 | SnoaL-like domain protein. | NADH-quinone oxidoreductase subunit 9; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.443 |
OSY40150.1 | sdhA | BG845_02973 | BG845_02247 | SnoaL-like domain protein. | Succinate dehydrogenase flavoprotein subunit. | 0.454 |
OSY40151.1 | OSY40150.1 | BG845_02974 | BG845_02973 | Anaerobic benzoate catabolism transcriptional regulator. | SnoaL-like domain protein. | 0.907 |
OSY40151.1 | OSY42034.1 | BG845_02974 | BG845_01530 | Anaerobic benzoate catabolism transcriptional regulator. | Carboxylesterase BioH. | 0.404 |
OSY42034.1 | OSY40150.1 | BG845_01530 | BG845_02973 | Carboxylesterase BioH. | SnoaL-like domain protein. | 0.496 |
OSY42034.1 | OSY40151.1 | BG845_01530 | BG845_02974 | Carboxylesterase BioH. | Anaerobic benzoate catabolism transcriptional regulator. | 0.404 |
OSY42034.1 | fdxA_2 | BG845_01530 | BG845_06541 | Carboxylesterase BioH. | Ferredoxin 7Fe; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.474 |
OSY42034.1 | nqo4 | BG845_01530 | BG845_00370 | Carboxylesterase BioH. | NADH-quinone oxidoreductase subunit 4; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.740 |
OSY42034.1 | nqo9 | BG845_01530 | BG845_05712 | Carboxylesterase BioH. | NADH-quinone oxidoreductase subunit 9; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.474 |
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