STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligB_2Protocatechuate 4,5-dioxygenase beta chain. (283 aa)    
Predicted Functional Partners:
ligA_2
Protocatechuate 4,5-dioxygenase alpha chain.
 
  
  0.994
gcvT_2
Aminomethyltransferase; Belongs to the GcvT family.
 
  
  0.974
pobA
P-hydroxybenzoate hydroxylase.
 
 
 0.949
tsaM1_2
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1.
 
  
 0.924
pht5
4,5-dihydroxyphthalate decarboxylase.
  
  
  0.911
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
    
 0.908
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
    
 0.908
proA_5
4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
   
 0.789
FldW
Amidohydrolase.
 
   
 0.784
OSY40170.1
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.780
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.