Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY36866.1 | OSY37229.1 | BG845_05138 | BG845_04923 | Hypothetical protein. | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.539 |
OSY36866.1 | OSY39870.1 | BG845_05138 | BG845_03105 | Hypothetical protein. | Transcriptional regulator BetI. | 0.676 |
OSY36866.1 | aspS | BG845_05138 | BG845_01752 | Hypothetical protein. | Aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.735 |
OSY36866.1 | mshD_4 | BG845_05138 | BG845_02152 | Hypothetical protein. | Mycothiol acetyltransferase. | 0.742 |
OSY36866.1 | pafA | BG845_05138 | BG845_02022 | Hypothetical protein. | Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.639 |
OSY37229.1 | OSY36866.1 | BG845_04923 | BG845_05138 | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Hypothetical protein. | 0.539 |
OSY37229.1 | OSY39870.1 | BG845_04923 | BG845_03105 | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Transcriptional regulator BetI. | 0.483 |
OSY39866.1 | OSY39867.1 | BG845_03101 | BG845_03102 | Hypothetical protein. | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. | 0.682 |
OSY39866.1 | OSY39870.1 | BG845_03101 | BG845_03105 | Hypothetical protein. | Transcriptional regulator BetI. | 0.486 |
OSY39866.1 | OSY39871.1 | BG845_03101 | BG845_03106 | Hypothetical protein. | Acyl-CoA dehydrogenase, short-chain specific. | 0.486 |
OSY39866.1 | fabG_16 | BG845_03101 | BG845_03103 | Hypothetical protein. | 3-oxoacyl-[acyl-carrier-protein] reductase FabG. | 0.682 |
OSY39866.1 | fadI | BG845_03101 | BG845_03104 | Hypothetical protein. | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.682 |
OSY39867.1 | OSY39866.1 | BG845_03102 | BG845_03101 | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. | Hypothetical protein. | 0.682 |
OSY39867.1 | OSY39870.1 | BG845_03102 | BG845_03105 | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. | Transcriptional regulator BetI. | 0.876 |
OSY39867.1 | OSY39871.1 | BG845_03102 | BG845_03106 | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. | Acyl-CoA dehydrogenase, short-chain specific. | 0.851 |
OSY39867.1 | fabG_16 | BG845_03102 | BG845_03103 | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. | 3-oxoacyl-[acyl-carrier-protein] reductase FabG. | 0.972 |
OSY39867.1 | fadI | BG845_03102 | BG845_03104 | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.969 |
OSY39870.1 | OSY36866.1 | BG845_03105 | BG845_05138 | Transcriptional regulator BetI. | Hypothetical protein. | 0.676 |
OSY39870.1 | OSY37229.1 | BG845_03105 | BG845_04923 | Transcriptional regulator BetI. | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.483 |
OSY39870.1 | OSY39866.1 | BG845_03105 | BG845_03101 | Transcriptional regulator BetI. | Hypothetical protein. | 0.486 |
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