Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY39617.1 | corC_3 | BG845_03214 | BG845_03211 | Alpha/beta hydrolase family protein. | Magnesium and cobalt efflux protein CorC. | 0.658 |
OSY39617.1 | era | BG845_03214 | BG845_03209 | Alpha/beta hydrolase family protein. | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.508 |
OSY39617.1 | recO | BG845_03214 | BG845_03208 | Alpha/beta hydrolase family protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.431 |
OSY39617.1 | ybeY | BG845_03214 | BG845_03212 | Alpha/beta hydrolase family protein. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.781 |
OSY39617.1 | ybeZ_2 | BG845_03214 | BG845_03213 | Alpha/beta hydrolase family protein. | PhoH-like protein. | 0.768 |
cdd | era | BG845_04676 | BG845_03209 | Cytidine deaminase. | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.798 |
cdd | recO | BG845_04676 | BG845_03208 | Cytidine deaminase. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.412 |
cdd | tadA_1 | BG845_04676 | BG845_01515 | Cytidine deaminase. | tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.406 |
cdd | ybeY | BG845_04676 | BG845_03212 | Cytidine deaminase. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.469 |
cdd | ybeZ_2 | BG845_04676 | BG845_03213 | Cytidine deaminase. | PhoH-like protein. | 0.588 |
cmk | era | BG845_06296 | BG845_03209 | Cytidylate kinase. | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.567 |
cmk | rsfS | BG845_06296 | BG845_03246 | Cytidylate kinase. | Ribosomal silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.545 |
cmk | rsmB | BG845_06296 | BG845_03696 | Cytidylate kinase. | Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.573 |
cmk | ybeZ_2 | BG845_06296 | BG845_03213 | Cytidylate kinase. | PhoH-like protein. | 0.676 |
corC_3 | OSY39617.1 | BG845_03211 | BG845_03214 | Magnesium and cobalt efflux protein CorC. | Alpha/beta hydrolase family protein. | 0.658 |
corC_3 | era | BG845_03211 | BG845_03209 | Magnesium and cobalt efflux protein CorC. | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.768 |
corC_3 | recO | BG845_03211 | BG845_03208 | Magnesium and cobalt efflux protein CorC. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.606 |
corC_3 | ybeY | BG845_03211 | BG845_03212 | Magnesium and cobalt efflux protein CorC. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.853 |
corC_3 | ybeZ_2 | BG845_03211 | BG845_03213 | Magnesium and cobalt efflux protein CorC. | PhoH-like protein. | 0.841 |
era | OSY39617.1 | BG845_03209 | BG845_03214 | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Alpha/beta hydrolase family protein. | 0.508 |
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