Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY36558.1 | OSY42364.1 | BG845_05325 | BG845_01284 | Blue-light-activated histidine kinase. | EAL domain protein. | 0.957 |
OSY36558.1 | cph2_1 | BG845_05325 | BG845_00731 | Blue-light-activated histidine kinase. | Phytochrome-like protein cph2. | 0.800 |
OSY36558.1 | cph2_2 | BG845_05325 | BG845_02629 | Blue-light-activated histidine kinase. | Phytochrome-like protein cph2. | 0.827 |
OSY36558.1 | cph2_3 | BG845_05325 | BG845_06490 | Blue-light-activated histidine kinase. | Phytochrome-like protein cph2. | 0.800 |
OSY36558.1 | fliA | BG845_05325 | BG845_02126 | Blue-light-activated histidine kinase. | RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.659 |
OSY36558.1 | gmr | BG845_05325 | BG845_02642 | Blue-light-activated histidine kinase. | Cyclic di-GMP phosphodiesterase Gmr. | 0.799 |
OSY36558.1 | pdhS | BG845_05325 | BG845_06114 | Blue-light-activated histidine kinase. | Cell-division control histidine kinase PdhS. | 0.968 |
OSY36558.1 | pleD | BG845_05325 | BG845_03331 | Blue-light-activated histidine kinase. | Response regulator PleD. | 0.568 |
OSY36558.1 | tmoS | BG845_05325 | BG845_06123 | Blue-light-activated histidine kinase. | Sensor histidine kinase TmoS. | 0.983 |
OSY42364.1 | OSY36558.1 | BG845_01284 | BG845_05325 | EAL domain protein. | Blue-light-activated histidine kinase. | 0.957 |
OSY42364.1 | cph2_1 | BG845_01284 | BG845_00731 | EAL domain protein. | Phytochrome-like protein cph2. | 0.922 |
OSY42364.1 | cph2_2 | BG845_01284 | BG845_02629 | EAL domain protein. | Phytochrome-like protein cph2. | 0.924 |
OSY42364.1 | cph2_3 | BG845_01284 | BG845_06490 | EAL domain protein. | Phytochrome-like protein cph2. | 0.919 |
OSY42364.1 | fliA | BG845_01284 | BG845_02126 | EAL domain protein. | RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.450 |
OSY42364.1 | gmr | BG845_01284 | BG845_02642 | EAL domain protein. | Cyclic di-GMP phosphodiesterase Gmr. | 0.924 |
OSY42364.1 | pdhS | BG845_01284 | BG845_06114 | EAL domain protein. | Cell-division control histidine kinase PdhS. | 0.912 |
OSY42364.1 | pleD | BG845_01284 | BG845_03331 | EAL domain protein. | Response regulator PleD. | 0.549 |
OSY42364.1 | tmoS | BG845_01284 | BG845_06123 | EAL domain protein. | Sensor histidine kinase TmoS. | 0.982 |
cph2_1 | OSY36558.1 | BG845_00731 | BG845_05325 | Phytochrome-like protein cph2. | Blue-light-activated histidine kinase. | 0.800 |
cph2_1 | OSY42364.1 | BG845_00731 | BG845_01284 | Phytochrome-like protein cph2. | EAL domain protein. | 0.922 |
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