STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleDResponse regulator PleD. (292 aa)    
Predicted Functional Partners:
cph2_3
Phytochrome-like protein cph2.
 
 
 0.871
tmoS
Sensor histidine kinase TmoS.
  
 
 0.815
fliA
RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.704
gmr
Cyclic di-GMP phosphodiesterase Gmr.
 
0.617
cph2_2
Phytochrome-like protein cph2.
 
0.615
cph2_1
Phytochrome-like protein cph2.
 
0.614
OSY36558.1
Blue-light-activated histidine kinase.
  
 
 0.568
lytR_3
Transcriptional regulator LytR.
       0.558
OSY42364.1
EAL domain protein.
 
  
 0.549
pdhS
Cell-division control histidine kinase PdhS.
 
  
 0.530
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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