STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdH_3L-carnitine dehydrogenase. (309 aa)    
Predicted Functional Partners:
lcdH_2
L-carnitine dehydrogenase; Overlaps another CDS with the same product name.
   
 0.967
paaF_3
2,3-dehydroadipyl-CoA hydratase.
 
 
 0.866
acsA_6
Acetyl-coenzyme A synthetase.
  
  
 0.847
kce_2
3-keto-5-aminohexanoate cleavage enzyme.
 
  
 0.838
OSY39222.1
Long-chain-fatty-acid--CoA ligase FadD13.
  
  
 0.832
kce_3
3-keto-5-aminohexanoate cleavage enzyme.
 
  
 0.725
kce_4
3-keto-5-aminohexanoate cleavage enzyme.
 
  
 0.719
OSY39218.1
Amidohydrolase.
       0.702
lcfB_16
Long-chain-fatty-acid--CoA ligase.
  
 
 0.631
paaJ
3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.631
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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