STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciC_3Putative metal chaperone YciC. (338 aa)    
Predicted Functional Partners:
yciC_2
Putative metal chaperone YciC.
 
   
 0.786
iolC_2
5-dehydro-2-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family.
   
   0.603
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.575
rpsZ
30S ribosomal protein S14 type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.575
dksA
RNA polymerase-binding transcription factor DksA.
  
  
 0.552
fimA
Manganese ABC transporter substrate-binding lipoprotein precursor.
  
  
 0.461
rpmB_1
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.461
SitA
Putative periplasmic iron-binding protein precursor; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.461
rpmB_2
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.461
OSY34558.1
Periplasmic solute binding protein family protein.
  
  
 0.461
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.