STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcpB_4Pentachlorophenol 4-monooxygenase. (426 aa)    
Predicted Functional Partners:
OSY39260.1
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein.
       0.768
AnsA
L-asparaginase II.
       0.539
ppsA_3
Phosphoenolpyruvate synthase.
  
  
 0.482
OSY39265.1
Bacterial regulatory proteins, tetR family.
 
   
 0.478
xlnD_2
3-hydroxybenzoate 6-hydroxylase 1.
  
     0.471
bmr3_2
Multidrug resistance protein 3.
  
  
 0.453
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
 
 
    0.439
OSY41557.1
6-hydroxynicotinate 3-monooxygenase precursor.
  
     0.410
OSY39703.1
Amidohydrolase; Overlaps another CDS with the same product name.
 
  
 0.401
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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