STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY39323.1LysM domain/BON superfamily protein. (1026 aa)    
Predicted Functional Partners:
OSY39321.1
TadE-like protein; Overlaps another CDS with the same product name.
 
     0.959
OSY39318.1
Hypothetical protein.
 
     0.945
OSY39314.1
Hypothetical protein.
 
     0.939
OSY39317.1
Hypothetical protein.
 
     0.939
OSY39313.1
Hypothetical protein.
 
     0.936
OSY39315.1
Hypothetical protein.
 
     0.936
ptlH
Type IV secretion system protein PtlH.
 
     0.846
OSY39320.1
TadE-like protein; Overlaps another CDS with the same product name.
       0.827
OSY39322.1
Hypothetical protein.
       0.822
OSY39324.1
Type IV leader peptidase family protein.
     
 0.782
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.