STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioI_2Biotin biosynthesis cytochrome P450. (416 aa)    
Predicted Functional Partners:
mbtB
Phenyloxazoline synthase MbtB.
  
 
 0.931
pobA
P-hydroxybenzoate hydroxylase.
  
 0.923
pobB_4
Phenoxybenzoate dioxygenase subunit beta.
 0.870
lcfB_16
Long-chain-fatty-acid--CoA ligase.
  
 0.706
Fdx
Ferredoxin-6.
 
 0.678
polA_1
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.617
bioI_1
Biotin biosynthesis cytochrome P450.
  
     0.597
pobB_3
Phenoxybenzoate dioxygenase subunit beta.
 
 0.536
OSY34374.1
Hypothetical protein.
 
 
 0.536
pobB_7
Phenoxybenzoate dioxygenase subunit beta.
 
 0.533
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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