STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfH_4Putative HTH-type transcriptional regulator YdfH. (225 aa)    
Predicted Functional Partners:
ydfH_3
Putative HTH-type transcriptional regulator YdfH.
  
     0.775
mcbR_3
HTH-type transcriptional regulator McbR.
  
     0.775
OSY38506.1
Colanic acid/biofilm transcriptional regulator.
  
     0.775
mcbR_4
HTH-type transcriptional regulator McbR.
  
     0.775
ydfH_10
Putative HTH-type transcriptional regulator YdfH.
  
     0.775
lutR_8
HTH-type transcriptional regulator LutR.
  
     0.775
csiR_2
HTH-type transcriptional repressor CsiR.
  
     0.775
lldR_4
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.774
pdhR_2
Pyruvate dehydrogenase complex repressor.
 
  
 0.694
lutR_2
HTH-type transcriptional regulator LutR.
 
  
 0.688
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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