Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY38506.1 | csiR_2 | BG845_04022 | BG845_06693 | Colanic acid/biofilm transcriptional regulator. | HTH-type transcriptional repressor CsiR. | 0.775 |
OSY38506.1 | lldR_4 | BG845_04022 | BG845_04539 | Colanic acid/biofilm transcriptional regulator. | Putative L-lactate dehydrogenase operon regulatory protein. | 0.750 |
OSY38506.1 | lutR_2 | BG845_04022 | BG845_01485 | Colanic acid/biofilm transcriptional regulator. | HTH-type transcriptional regulator LutR. | 0.693 |
OSY38506.1 | lutR_8 | BG845_04022 | BG845_05532 | Colanic acid/biofilm transcriptional regulator. | HTH-type transcriptional regulator LutR. | 0.775 |
OSY38506.1 | mcbR_3 | BG845_04022 | BG845_03347 | Colanic acid/biofilm transcriptional regulator. | HTH-type transcriptional regulator McbR. | 0.775 |
OSY38506.1 | pdhR_2 | BG845_04022 | BG845_04980 | Colanic acid/biofilm transcriptional regulator. | Pyruvate dehydrogenase complex repressor. | 0.658 |
OSY38506.1 | ydfH_3 | BG845_04022 | BG845_01368 | Colanic acid/biofilm transcriptional regulator. | Putative HTH-type transcriptional regulator YdfH. | 0.774 |
OSY38506.1 | ydfH_4 | BG845_04022 | BG845_03762 | Colanic acid/biofilm transcriptional regulator. | Putative HTH-type transcriptional regulator YdfH. | 0.775 |
csiR_2 | OSY38506.1 | BG845_06693 | BG845_04022 | HTH-type transcriptional repressor CsiR. | Colanic acid/biofilm transcriptional regulator. | 0.775 |
csiR_2 | lldR_4 | BG845_06693 | BG845_04539 | HTH-type transcriptional repressor CsiR. | Putative L-lactate dehydrogenase operon regulatory protein. | 0.747 |
csiR_2 | lutR_2 | BG845_06693 | BG845_01485 | HTH-type transcriptional repressor CsiR. | HTH-type transcriptional regulator LutR. | 0.668 |
csiR_2 | lutR_8 | BG845_06693 | BG845_05532 | HTH-type transcriptional repressor CsiR. | HTH-type transcriptional regulator LutR. | 0.775 |
csiR_2 | mcbR_3 | BG845_06693 | BG845_03347 | HTH-type transcriptional repressor CsiR. | HTH-type transcriptional regulator McbR. | 0.775 |
csiR_2 | pdhR_2 | BG845_06693 | BG845_04980 | HTH-type transcriptional repressor CsiR. | Pyruvate dehydrogenase complex repressor. | 0.667 |
csiR_2 | ydfH_10 | BG845_06693 | BG845_05022 | HTH-type transcriptional repressor CsiR. | Putative HTH-type transcriptional regulator YdfH. | 0.773 |
csiR_2 | ydfH_3 | BG845_06693 | BG845_01368 | HTH-type transcriptional repressor CsiR. | Putative HTH-type transcriptional regulator YdfH. | 0.773 |
csiR_2 | ydfH_4 | BG845_06693 | BG845_03762 | HTH-type transcriptional repressor CsiR. | Putative HTH-type transcriptional regulator YdfH. | 0.775 |
lldR_4 | OSY38506.1 | BG845_04539 | BG845_04022 | Putative L-lactate dehydrogenase operon regulatory protein. | Colanic acid/biofilm transcriptional regulator. | 0.750 |
lldR_4 | csiR_2 | BG845_04539 | BG845_06693 | Putative L-lactate dehydrogenase operon regulatory protein. | HTH-type transcriptional repressor CsiR. | 0.747 |
lldR_4 | lutR_8 | BG845_04539 | BG845_05532 | Putative L-lactate dehydrogenase operon regulatory protein. | HTH-type transcriptional regulator LutR. | 0.794 |
page 1 of 5