STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
limB_8Limonene 1,2-monooxygenase. (373 aa)    
Predicted Functional Partners:
luxA_8
Alkanal monooxygenase alpha chain.
  
    0.604
ssuB_3
Aliphatic sulfonates import ATP-binding protein SsuB.
  
  
 0.556
ssuC_12
Putative aliphatic sulfonates transport permease protein SsuC; Overlaps another CDS with the same product name.
  
    0.549
ssuC_13
Putative aliphatic sulfonates transport permease protein SsuC; Overlaps another CDS with the same product name.
  
    0.549
OSY38503.1
Putative thiamine biosynthesis protein.
  
  
 0.517
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.