STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY38528.1N-carbamoyl-D-amino acid hydrolase. (278 aa)    
Predicted Functional Partners:
thiL_1
Thiamine-monophosphate kinase.
   
 0.958
OSY38525.1
Lipoyl synthase.
 
     0.943
OSY38529.1
Glycogen synthase.
 
  
 0.913
OSY38524.1
Hypothetical protein.
 
   
 0.904
ramA_2
(R)-stereoselective amidase.
 
    
0.783
czcO_1
Putative oxidoreductase CzcO.
 
  
 0.748
pimA_1
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase.
 
  
 0.677
OSY43492.1
Radical SAM superfamily protein.
 
     0.666
OSY37577.1
Hypothetical protein.
 
  
 0.626
OSY43486.1
Hypothetical protein.
 
   
 0.607
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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