STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trkA_1Trk system potassium uptake protein TrkA; Overlaps another CDS with the same product name. (220 aa)    
Predicted Functional Partners:
trkA_2
Trk system potassium uptake protein TrkA; Overlaps another CDS with the same product name.
 
  
0.916
OSY38278.1
Hypothetical protein.
 
   
 0.903
ktrB
Ktr system potassium uptake protein B.
  
 
 0.844
OSY38282.1
Hypothetical protein.
 
     0.766
rsmB
Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.717
moaE
Molybdopterin synthase catalytic subunit.
  
    0.661
OSY38277.1
Putative RNA methyltransferase/cg2084; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.653
OSY42494.1
Bifunctional uroporphyrinogen-III synthetase/response regulator domain protein.
 
  
 0.592
cysG
Siroheme synthase.
  
    0.505
khtT
K(+)/H(+) antiporter subunit KhtT.
  
  
 0.456
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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