STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigGECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (369 aa)    
Predicted Functional Partners:
sigK
ECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.810
sigL_2
ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.695
sigH_1
ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.669
clpP2_3
ATP-dependent Clp protease proteolytic subunit 2; Belongs to the peptidase S14 family.
  
  
 0.596
OSY38081.1
Hypothetical protein.
     
 0.540
OSY35314.1
Hypothetical protein.
 
 
 0.501
OSY38084.1
Bacterial regulatory proteins, tetR family.
       0.497
OSY38080.1
Hypothetical protein.
 
     0.491
sigL_1
ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.472
OSY38676.1
YCII-related domain protein.
  
     0.460
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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