STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY38147.1Hypothetical protein. (242 aa)    
Predicted Functional Partners:
yxlF_6
Putative ABC transporter ATP-binding protein YxlF.
       0.827
OSY42402.1
ABC-2 family transporter protein.
  
 
 0.559
OSY39089.1
ABC-2 family transporter protein.
  
 
 0.559
OSY38257.1
ABC-2 family transporter protein.
  
 
 0.559
OSY34434.1
Hypothetical protein.
  
 
 0.559
yghB
Inner membrane protein YghB.
       0.471
msbA
Lipid A export ATP-binding/permease protein MsbA.
  
 0.440
smc_4
Chromosome partition protein Smc.
  
  
 0.415
irtA_1
Iron import ATP-binding/permease protein IrtA.
  
 0.409
irtB_1
Iron import ATP-binding/permease protein IrtB.
  
 0.409
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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