STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yabJ_4Enamine/imine deaminase. (152 aa)    
Predicted Functional Partners:
OSY38003.1
Cupin domain protein.
 
     0.815
OSY38006.1
SnoaL-like domain protein.
 
     0.810
OSY38005.1
Ureidoglycolate lyase.
  
    0.787
bphA
Biphenyl dioxygenase subunit alpha.
 
    0.760
yabJ_5
Enamine/imine deaminase.
  
     0.752
OSY38007.1
Dihydroorotase.
 
  
 0.732
yabJ_2
Enamine/imine deaminase.
  
     0.715
cmpD_3
Bicarbonate transport ATP-binding protein CmpD.
       0.667
yabJ_3
Enamine/imine deaminase.
  
     0.666
OSY37999.1
Taurine transporter subunit.
       0.664
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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