STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikA_3Nickel-binding periplasmic protein precursor. (545 aa)    
Predicted Functional Partners:
gsiC_8
Glutathione transport system permease protein GsiC.
 
 0.936
ddpC_2
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.924
ntaA_2
Nitrilotriacetate monooxygenase component A.
 
   
 0.892
moxC
Putative monooxygenase MoxC.
   
 0.886
ddpC_1
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.848
gsiC_5
Glutathione transport system permease protein GsiC.
 
 0.797
nikB_3
Nickel transport system permease protein NikB.
 
 
 0.721
gsiA_7
Glutathione import ATP-binding protein GsiA.
  
 0.672
gsiD_9
Glutathione transport system permease protein GsiD.
 
 0.658
gsiC_10
Glutathione transport system permease protein GsiC.
 
 0.638
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.