STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadDLong-chain-fatty-acid--CoA ligase. (517 aa)    
Predicted Functional Partners:
fabG3_3
3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase.
 
 
 0.932
OSY37589.1
Transcriptional regulator BetI.
 
     0.870
rutA_4
Pyrimidine monooxygenase RutA.
 
   
 0.804
lcfB_16
Long-chain-fatty-acid--CoA ligase.
 
0.661
OSY42814.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
 0.613
bclA_2
Benzoate--CoA ligase.
 
 
0.550
acsA_4
Acetyl-coenzyme A synthetase.
 
0.538
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.529
bclA_1
Benzoate--CoA ligase.
 
 
0.524
OSY38337.1
Cytochrome P450-pinF2, plant-inducible.
 
 0.510
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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