STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsCRibose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family. (358 aa)    
Predicted Functional Partners:
mglA_2
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 0.998
OSY37640.1
Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
0.996
tmpC
Membrane lipoprotein TmpC precursor.
 
 
 0.995
cdd
Cytidine deaminase.
 
  
 0.897
pdp
Pyrimidine-nucleoside phosphorylase.
 
   
 0.873
xylG
Xylose import ATP-binding protein XylG.
     0.608
OSY37644.1
Polyketide cyclase / dehydrase and lipid transport.
       0.490
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
     0.458
mviN_1
Putative peptidoglycan biosynthesis protein MviN.
       0.447
psuG
Pseudouridine-5'-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
 
     0.430
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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