STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY36146.1Hypothetical protein. (1342 aa)    
Predicted Functional Partners:
msbA
Lipid A export ATP-binding/permease protein MsbA.
  
  
 0.545
EttA
Putative ABC transporter ATP-binding protein/MT2552.
     
 0.540
gdh
NAD-specific glutamate dehydrogenase.
       0.512
tmoS
Sensor histidine kinase TmoS.
  
  
 0.483
OSY43699.1
Bifunctional beta-D-glucosidase/beta-D-fucosidase.
   
 
 0.465
OSY36148.1
Thioesterase superfamily protein.
       0.461
OSY36149.1
Hypothetical protein.
       0.461
ssb_2
Single-stranded DNA-binding protein.
       0.450
OSY39682.1
Hypothetical protein.
   
 
 0.425
recA
DNA recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.412
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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