Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY36077.1 | OSY36078.1 | BG845_05592 | BG845_05593 | Recombination and repair protein RecT. | YqaJ-like viral recombinase domain protein. | 0.974 |
OSY36077.1 | OSY36094.1 | BG845_05592 | BG845_05609 | Recombination and repair protein RecT. | Hypothetical protein. | 0.482 |
OSY36077.1 | dcd_2 | BG845_05592 | BG845_05610 | Recombination and repair protein RecT. | Deoxycytidine triphosphate deaminase. | 0.494 |
OSY36077.1 | ssb_3 | BG845_05592 | BG845_05591 | Recombination and repair protein RecT. | Single-stranded DNA-binding protein. | 0.798 |
OSY36078.1 | OSY36077.1 | BG845_05593 | BG845_05592 | YqaJ-like viral recombinase domain protein. | Recombination and repair protein RecT. | 0.974 |
OSY36078.1 | OSY36094.1 | BG845_05593 | BG845_05609 | YqaJ-like viral recombinase domain protein. | Hypothetical protein. | 0.482 |
OSY36078.1 | dcd_2 | BG845_05593 | BG845_05610 | YqaJ-like viral recombinase domain protein. | Deoxycytidine triphosphate deaminase. | 0.482 |
OSY36078.1 | ssb_3 | BG845_05593 | BG845_05591 | YqaJ-like viral recombinase domain protein. | Single-stranded DNA-binding protein. | 0.791 |
OSY36094.1 | OSY36077.1 | BG845_05609 | BG845_05592 | Hypothetical protein. | Recombination and repair protein RecT. | 0.482 |
OSY36094.1 | OSY36078.1 | BG845_05609 | BG845_05593 | Hypothetical protein. | YqaJ-like viral recombinase domain protein. | 0.482 |
OSY36094.1 | dcd_2 | BG845_05609 | BG845_05610 | Hypothetical protein. | Deoxycytidine triphosphate deaminase. | 0.773 |
OSY36094.1 | ssb_3 | BG845_05609 | BG845_05591 | Hypothetical protein. | Single-stranded DNA-binding protein. | 0.482 |
dcd_1 | dcd_2 | BG845_04424 | BG845_05610 | Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate. | Deoxycytidine triphosphate deaminase. | 0.912 |
dcd_1 | dut | BG845_04424 | BG845_04238 | Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.922 |
dcd_1 | ndkA | BG845_04424 | BG845_02966 | Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.928 |
dcd_1 | ppa | BG845_04424 | BG845_03051 | Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate. | Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | 0.468 |
dcd_1 | pyrG | BG845_04424 | BG845_06278 | Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.925 |
dcd_1 | rmlD | BG845_04424 | BG845_00614 | Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.684 |
dcd_2 | OSY36077.1 | BG845_05610 | BG845_05592 | Deoxycytidine triphosphate deaminase. | Recombination and repair protein RecT. | 0.494 |
dcd_2 | OSY36078.1 | BG845_05610 | BG845_05593 | Deoxycytidine triphosphate deaminase. | YqaJ-like viral recombinase domain protein. | 0.482 |
page 1 of 3