STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
suaB_3Ferredoxin-1. (62 aa)    
Predicted Functional Partners:
OSY35899.1
Pentalenic acid synthase; Belongs to the cytochrome P450 family.
 
  
 0.886
OSY35900.1
2-dehydropantoate 2-reductase.
       0.625
OSY35896.1
Hypothetical protein.
       0.615
OSY35897.1
Bacterial regulatory proteins, tetR family.
       0.615
tsaM1_1
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1.
 
   
 0.477
OSY42914.1
Cytochrome P450-SU2.
 
  
 0.459
algB
Alginate biosynthesis transcriptional regulatory protein AlgB.
       0.443
rbsK_3
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
       0.417
OSY35283.1
Phosphotransferase enzyme family protein.
  
     0.414
OSY42301.1
Tetratricopeptide repeat protein.
 
     0.411
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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