STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pduEPropanediol dehydratase small subunit. (141 aa)    
Predicted Functional Partners:
dhaB
Glycerol dehydratase large subunit.
 
 
 0.997
pduD
Propanediol dehydratase medium subunit.
 
 
 0.996
ddrA
Diol dehydratase-reactivating factor alpha subunit.
 
  
 0.944
OSY35925.1
Hypothetical protein.
 
   
 0.937
OSY35918.1
Hypothetical protein.
  
  
 0.909
glpF_2
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
     
 0.793
pduA_1
Propanediol utilization protein PduA.
 
  
 0.666
pduA_2
Propanediol utilization protein PduA.
 
  
 0.655
eutN
Ethanolamine utilization protein EutN.
 
  
 0.518
OSY43457.1
Cob(I)yrinic acid a,c-diamide adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
   
 0.509
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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