STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
linBHaloalkane dehalogenase. (290 aa)    
Predicted Functional Partners:
flhA
S-(hydroxymethyl)glutathione dehydrogenase.
   
  0.911
adhD_3
Putative alcohol dehydrogenase D.
   
  0.911
adhT_2
Alcohol dehydrogenase.
    
  0.909
dhaT_1
1,3-propanediol dehydrogenase.
    
 0.901
qedA
Quinoprotein ethanol dehydrogenase precursor.
     
  0.900
acuR
Transcriptional regulator AcuR.
 
     0.800
OSY40794.1
Soluble epoxide hydrolase.
  
     0.640
OSY35214.1
Fluoroacetate dehalogenase.
  
     0.632
OSY41824.1
Soluble epoxide hydrolase.
  
     0.618
OSY40717.1
Protochlorophyllide oxidoreductase.
 
   0.579
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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