STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acoCDihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system. (257 aa)    
Predicted Functional Partners:
carC
2-hydroxy-6-oxo-6-(2'-aminophenyl)hexa-2, 4-dienoic acid hydrolase.
 
     0.807
gctB
Glutaconate CoA-transferase subunit B.
  
  
 0.794
OSY35754.1
Long-chain-fatty-acid--CoA ligase FadD13.
   
   0.722
catI
3-oxoadipate CoA-transferase subunit A.
  
  
 0.715
OSY35758.1
Hypothetical protein.
  
    0.548
OSY35759.1
Hypothetical protein.
  
    0.504
rhmA_2
2-keto-3-deoxy-L-rhamnonate aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.493
OSY35761.1
Hypothetical protein.
       0.493
ligI
2-pyrone-4,6-dicarbaxylate hydrolase.
     
 0.471
OSY35763.1
4-sulfomuconolactone hydrolase.
     
 0.471
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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