STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytcD_2Putative HTH-type transcriptional regulator YtcD. (175 aa)    
Predicted Functional Partners:
yodB_1
HTH-type transcriptional regulator YodB.
  
     0.774
yodB_2
HTH-type transcriptional regulator YodB.
  
     0.769
yybR_1
Putative HTH-type transcriptional regulator YybR.
  
     0.708
OSY40323.1
PemK-like protein.
   
    0.638
ydbC
Putative oxidoreductase YdbC.
     
 0.579
OSY35493.1
Hypothetical protein.
       0.548
hxlR
HTH-type transcriptional activator HxlR.
  
     0.512
OSY34394.1
Hypothetical protein.
  
  
 0.412
clpP2_4
ATP-dependent Clp protease proteolytic subunit 2; Belongs to the peptidase S14 family.
       0.407
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.407
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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