STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvoA_6HTH-type transcriptional repressor YvoA. (227 aa)    
Predicted Functional Partners:
OSY35338.1
Hypothetical protein.
 
   
 0.772
phnR
Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons.
  
     0.680
OSY41465.1
Hypothetical protein.
  
     0.540
OSY35336.1
Hypothetical protein.
       0.525
OSY35339.1
Helix-turn-helix domain protein.
     
 0.522
OSY35337.1
Hypothetical protein.
       0.520
OSY35340.1
Hypothetical protein.
       0.520
OSY35341.1
Transposase from transposon Tn916; Belongs to the 'phage' integrase family.
       0.520
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.485
ripA_6
HTH-type transcriptional repressor of iron proteins A.
  
  
 0.468
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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