STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0183KEGG: dps:DP1028 glutamine ABC transporter, permease protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component. (223 aa)    
Predicted Functional Partners:
Dde_0184
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_1569 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 0.984
Dde_0168
ABC-type transporter, periplasmic subunit family 3; KEGG: dvm:DvMF_1918 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.977
Dde_0186
ABC-type transporter, periplasmic subunit family 3; KEGG: dvl:Dvul_2548 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
 
 0.931
Dde_2308
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvl:Dvul_1826 amino acid ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
 0.924
Dde_3744
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: das:Daes_0844 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
 
 0.924
Dde_0166
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvl:Dvul_2857 ABC transporter; SMART: ATPase, AAA+ type, core.
 
 0.923
Dde_1387
Phosphate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_1342 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 0.921
Dde_1428
Phosphate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvl:Dvul_0916 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
 0.917
Dde_2763
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_2788 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 0.917
Dde_3742
ABC-type transporter, periplasmic subunit family 3; KEGG: das:Daes_0842 family 3 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.913
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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