STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0413Arylesterase; KEGG: dvm:DvMF_2220 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL. (235 aa)    
Predicted Functional Partners:
Dde_0411
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2222 protein of unknown function DUF214.
 
     0.878
Dde_0412
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_2221 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
     0.869
Dde_1531
PFAM: Alpha/beta hydrolase fold-1; KEGG: dvm:DvMF_0829 alpha/beta hydrolase fold protein.
 
   
 0.487
Dde_2848
KEGG: dvm:DvMF_2759 protein of unknown function DUF255.
   
 
 0.448
Dde_2850
KEGG: dvm:DvMF_2759 protein of unknown function DUF255.
   
 
 0.448
Dde_0038
KEGG: dvu:DVU4021 hypothetical protein.
  
   0.430
Dde_0947
PFAM: Baseplate assembly protein J-like, predicted; KEGG: das:Daes_1639 baseplate J family protein.
  
   0.430
Dde_2507
PEP motif putative anchor domain protein; KEGG: dba:Dbac_2235 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial.
  
   0.430
Dde_2509
PEP motif putative anchor domain protein; KEGG: dvm:DvMF_0694 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial.
  
   0.430
Dde_2510
PEP motif putative anchor domain protein; KEGG: dvm:DvMF_0694 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial.
  
   0.430
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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