STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0605PFAM: Dual specificity phosphatase, catalytic domain; KEGG: dba:Dbac_1987 dual specificity protein phosphatase. (419 aa)    
Predicted Functional Partners:
Dde_0604
Pyruvate, water dikinase; KEGG: dvm:DvMF_2187 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region.
 
   
 0.920
Dde_0603
KEGG: dvm:DvMF_2188 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
 
   
 0.824
Dde_0602
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_2189 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS.
 
     0.757
Dde_0601
TIGRFAM: Phosphonate-binding periplasmic protein; KEGG: dsa:Desal_2373 phosphonate ABC transporter periplasmic phosphonate-binding protein.
 
   
 0.738
Dde_2070
Sporulation domain-containing protein; PFAM: Sporulation/cell division region, bacteria; KEGG: dvm:DvMF_0405 hypothetical protein.
   
 0.736
Dde_3707
KEGG: dvl:Dvul_2712 hypothetical protein.
   
 0.736
Dde_2348
KEGG: dvm:DvMF_0004 protein of unknown function DUF181; TIGRFAM: YcaO-like; PFAM: YcaO-like; Tetratricopeptide TPR-1.
 
 
 0.725
Dde_0523
KEGG: dvu:DVU0400 hypothetical protein.
 
     0.716
Dde_2939
KEGG: dvl:Dvul_2272 hypothetical protein.
  
     0.701
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
    
  0.693
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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