STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0700PFAM: Secretion protein HlyD; KEGG: das:Daes_1393 secretion protein HlyD family protein. (359 aa)    
Predicted Functional Partners:
Dde_0699
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: das:Daes_1392 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
  
 0.959
Dde_0698
PFAM: ABC-2 type transporter; KEGG: das:Daes_1391 ABC-2 type transporter.
 
  
 0.957
Dde_0400
KEGG: dbr:Deba_0020 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein.
 
 
 0.806
Dde_1418
SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system; KEGG: dvm:DvMF_1160 cyclic nucleotide-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region.
  
 
 0.803
Dde_1415
KEGG: dvm:DvMF_1494 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein.
 
 
 0.764
Dde_0961
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 
 0.727
Dde_3627
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 
 0.727
Dde_1336
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2954 protein of unknown function DUF214.
 
  
 0.611
Dde_1335
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2953 protein of unknown function DUF214.
 
  
 0.605
Dde_0730
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: das:Daes_0606 hypothetical protein.
  
  
 0.548
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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