STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0822PFAM: UBA/THIF-type NAD/FAD binding fold; Nitroreductase-like; KEGG: dvm:DvMF_0692 hypothetical protein. (965 aa)    
Predicted Functional Partners:
Dde_1554
KEGG: dvm:DvMF_0801 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS.
  
 
 0.873
Dde_2458
PFAM: ThiamineS; KEGG: dvl:Dvul_1876 thiamineS protein.
  
 
 0.827
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.811
Dde_3610
KEGG: dvu:DVU0136 hypothetical protein.
  
 
 0.788
Dde_2352
KEGG: dvm:DvMF_0872 hypothetical protein.
  
 0.738
Dde_0679
Rhodanese-like protein; KEGG: dsa:Desal_0374 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like.
 
 
 
 0.672
Dde_1680
KEGG: dvl:Dvul_1663 thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC.
  
  
 0.653
Dde_0831
KEGG: dvl:Dvul_3070 lipopolysaccharide biosynthesis; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: Lipopolysaccharide biosynthesis.
  
     0.610
Dde_2688
TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: dvl:Dvul_2054 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.
  
  
 0.599
Dde_3078
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.591
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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