STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0997TIGRFAM: Conserved hypothetical protein CHP01212; PFAM: Radical SAM; KEGG: dvm:DvMF_2819 conserved hypothetical radical SAM protein; SMART: Elongator protein 3/MiaB/NifB. (359 aa)    
Predicted Functional Partners:
Dde_0996
KEGG: dvm:DvMF_2820 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl.
       0.608
Dde_0998
KEGG: dvm:DvMF_2818 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding.
       0.589
Dde_0995
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.541
Dde_0095
PFAM: Putative rRNA methylase; KEGG: dvm:DvMF_2114 putative rRNA methylase.
 
    0.451
Dde_2753
KEGG: dvm:DvMF_2798 transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding.
   
    0.443
Dde_3702
KEGG: dma:DMR_26460 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC domain.
   
    0.443
Dde_0993
TIGRFAM: Penicillin-binding protein 2; KEGG: dvl:Dvul_2187 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain.
       0.434
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.431
Dde_0994
KEGG: dvl:Dvul_2186 hypothetical protein.
       0.430
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.