STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1001KEGG: dsa:Desal_3145 hypothetical protein. (98 aa)    
Predicted Functional Partners:
Dde_1000
KEGG: dvm:DvMF_2817 hypothetical protein.
 
    
0.794
Dde_3025
KEGG: dvm:DvMF_1577 hypothetical protein.
  
     0.718
Dde_2610
KEGG: dvm:DvMF_0972 hypothetical protein.
  
     0.601
Dde_2292
KEGG: dvl:Dvul_1811 hypothetical protein.
  
     0.597
Dde_0521
KEGG: dvm:DvMF_1550 hypothetical protein.
  
     0.538
Dde_0999
Malto-oligosyltrehalose trehalohydrolase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: mta:Moth_1809 malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic region.
       0.537
Dde_0283
KEGG: dvl:Dvul_2677 hypothetical protein.
  
     0.527
Dde_1974
KEGG: dvm:DvMF_0357 histidine triad (HIT) protein.
  
     0.493
Dde_0740
PFAM: Radical SAM; KEGG: das:Daes_0309 radical SAM domain-containing protein.
  
     0.482
Dde_3496
KEGG: dvu:DVU0455 hypothetical protein.
  
     0.469
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.