STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1052PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvm:DvMF_0945 4Fe-4S ferredoxin iron-sulfur binding domain protein. (339 aa)    
Predicted Functional Partners:
Dde_0561
KEGG: drt:Dret_0454 cytochrome c family protein.
 
  
 0.761
Dde_0291
PFAM: Cytochrome c, class I; KEGG: drt:Dret_0454 cytochrome c family protein.
 
  
 0.756
Dde_3237
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.686
Dde_3078
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.541
Dde_1195
PFAM: Nitroreductase-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dba:Dbac_0625 nitroreductase.
  
 
 0.529
Dde_2413
PFAM: Nitroreductase-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_1838 nitroreductase.
  
 
 0.529
Dde_1272
SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Glycyl radical enzyme-activating; KEGG: dvl:Dvul_0490 glycyl-radical activating family protein; PFAM: Radical SAM; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup.
  
 
 0.526
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.505
Dde_0299
PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: dal:Dalk_3571 NapC/NirT cytochrome c domain protein.
  
 
 0.500
Dde_0300
KEGG: dal:Dalk_2563 hypothetical protein.
  
 
 0.500
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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