STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1201PFAM: Sulfatase; KEGG: dsa:Desal_0410 sulfatase. (507 aa)    
Predicted Functional Partners:
Dde_1202
Thioredoxin domain-containing protein; PFAM: Thioredoxin domain; KEGG: dsa:Desal_0409 thioredoxin.
 
  
 0.868
Dde_0464
PFAM: Glutaredoxin; KEGG: dvl:Dvul_2555 glutaredoxin.
 
  
 0.784
Dde_1204
PFAM: Sodium/sulphate symporter; KEGG: dsa:Desal_0407 sodium/sulfate symporter.
 
   
 0.732
Dde_2429
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.664
Dde_2658
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dvm:DvMF_1004 short-chain dehydrogenase/reductase SDR.
   
 
 0.664
Dde_2921
KEGG: dvl:Dvul_2612 hypothetical protein.
   
 
 0.664
Dde_3434
KEGG: dvl:Dvul_2612 hypothetical protein.
   
 
 0.664
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.604
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.587
Dde_2493
KEGG: din:Selin_1700 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA primase, small subunit; SMART: DEAD-like helicase, N-terminal.
    
   0.581
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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