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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1663KEGG: dvu:DVU1871 aspartate ammonia-lyase; PFAM: Fumarate lyase; Fumarase C, C-terminal. (474 aa)    
Predicted Functional Partners:
Dde_1829
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
 
   
 0.916
Dde_3552
Aspartate ammonia-lyase; KEGG: das:Daes_0595 fumarate lyase; PFAM: Fumarate lyase.
  
  
 
0.910
Dde_2284
Asparaginase; KEGG: dvl:Dvul_1000 peptidase T2, asparaginase 2; PFAM: Peptidase T2, asparaginase 2.
    
 0.908
argH
TIGRFAM: Argininosuccinate lyase; KEGG: dvl:Dvul_1901 argininosuccinate lyase; PFAM: Fumarate lyase.
     
0.907
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.905
Dde_1103
KEGG: dvm:DvMF_2889 aspartate aminotransferase; PFAM: Aminotransferase, class I/II.
    
 0.905
Dde_3011
KEGG: dvm:DvMF_1468 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.905
Dde_3596
Aspartate transaminase; KEGG: dvl:Dvul_0165 aminotransferase, class I and II; PFAM: Aminotransferase, class I/II.
    
 0.905
Dde_0842
PFAM: Asparagine synthase; KEGG: eba:ebA4312 hypothetical protein.
     
 0.900
Dde_1135
PFAM: Asparagine synthase; KEGG: mag:amb0042 asparagine synthase.
     
 0.900
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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