STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1925KEGG: sfu:Sfum_3786 hypothetical protein. (256 aa)    
Predicted Functional Partners:
Dde_1921
PFAM: DNA primase, catalytic core, N-terminal; KEGG: sfu:Sfum_3790 DNA primase catalytic core.
 
    0.949
Dde_1923
PFAM: ERCC4 domain; KEGG: sfu:Sfum_3788 ERCC4 domain-containing protein.
 
     0.944
Dde_1926
KEGG: dly:Dehly_1694 hypothetical protein.
 
     0.931
Dde_1928
KEGG: sfu:Sfum_3783 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2.
 
     0.882
Dde_0917
KEGG: dbr:Deba_1821 hypothetical protein.
  
    0.819
Dde_1909
KEGG: sfu:Sfum_3801 hypothetical protein.
  
    0.819
Dde_1922
KEGG: dly:Dehly_1690 UvrD/REP helicase.
 
     0.816
Dde_0907
PFAM: DNA primase, catalytic core, N-terminal; KEGG: geb:GM18_2979 DNA primase catalytic core domain-containing protein.
 
    0.799
Dde_0900
TIGRFAM: RNA polymerase sigma-70; KEGG: dbr:Deba_1837 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.785
Dde_1924
PFAM: Protein of unknown function DUF669; KEGG: sfu:Sfum_3787 hypothetical protein.
       0.770
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.