STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1995KEGG: dvm:DvMF_0342 hypothetical protein. (591 aa)    
Predicted Functional Partners:
Dde_1994
GAF domain protein; KEGG: dvl:Dvul_1405 GAF sensor protein; PFAM: GAF; SMART: GAF.
 
     0.871
Dde_1702
KEGG: dvl:Dvul_1643 hypothetical protein.
  
     0.770
Dde_2118
KEGG: dvl:Dvul_1551 hypothetical protein.
  
     0.770
Dde_2441
KEGG: dvm:DvMF_3088 hypothetical protein.
  
     0.770
Dde_0979
KEGG: dvm:DvMF_1183 hypothetical protein.
  
     0.766
Dde_2440
KEGG: dvm:DvMF_3089 putative lipoprotein.
  
     0.766
Dde_1022
KEGG: dvm:DvMF_2836 hypothetical protein.
  
     0.765
Dde_1579
KEGG: dvu:DVU2071 hypothetical protein.
  
     0.762
Dde_1634
KEGG: dvm:DvMF_0611 hypothetical protein.
  
     0.762
Dde_0121
KEGG: dvm:DvMF_2025 hypothetical protein.
  
     0.761
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.